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        "all_loci_p_value": 1.0,
        "hgt_all_loci": 1,
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        "hgt_loci": "",
        "core_loci": "NC_029680.1:LOC107410533;NC_029680.1:LOC107412395;NC_029680.1:LOC107412567",
        "q_value": 1.0,
        "all_loci_q_value": 1.0,
        "significant": false
      },
      {
        "namespace": "GO_CC",
        "term": "GO:0043233",
        "name": "organelle lumen",
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        "hgt_all_loci": 1,
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        "hgt_loci": "",
        "core_loci": "NC_029680.1:LOC107410533;NC_029680.1:LOC107410634;NC_029680.1:LOC107411763;NC_029680.1:LOC107412395;NC_029680.1:LOC107412457;NC_029680.1:LOC107412567",
        "q_value": 1.0,
        "all_loci_q_value": 1.0,
        "significant": false
      },
      {
        "namespace": "GO_CC",
        "term": "GO:0070013",
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        "hgt_loci": "",
        "core_loci": "NC_029680.1:LOC107410533;NC_029680.1:LOC107410634;NC_029680.1:LOC107411763;NC_029680.1:LOC107412395;NC_029680.1:LOC107412457;NC_029680.1:LOC107412567",
        "q_value": 1.0,
        "all_loci_q_value": 1.0,
        "significant": false
      },
      {
        "namespace": "GO_CC",
        "term": "GO:0097708",
        "name": "intracellular vesicle",
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        "hgt_loci": "",
        "core_loci": "NC_029680.1:LOC107410561;NC_029680.1:LOC107412272",
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        "significant": false
      },
      {
        "namespace": "GO_CC",
        "term": "GO:0098796",
        "name": "membrane protein complex",
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        "all_loci_q_value": 1.0,
        "significant": false
      },
      {
        "namespace": "GO_CC",
        "term": "GO:0098827",
        "name": "endoplasmic reticulum subcompartment",
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        "hgt_loci": "",
        "core_loci": "NC_029680.1:LOC107412165;NC_029680.1:LOC107412169;NC_029680.1:LOC107412360",
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        "all_loci_q_value": 1.0,
        "significant": false
      },
      {
        "namespace": "GO_CC",
        "term": "GO:0110165",
        "name": "cellular anatomical structure",
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        "hgt_fraction": 1.0,
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        "odds_ratio": null,
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        "all_loci_p_value": 0.8076923076923077,
        "hgt_all_loci": 1,
        "core_all_loci": 25,
        "hgt_loci": "NC_029680.1:LOC107410231",
        "core_loci": "NC_029680.1:LOC107410512;NC_029680.1:LOC107410533;NC_029680.1:LOC107410561;NC_029680.1:LOC107410634;NC_029680.1:LOC107411315;NC_029680.1:LOC107411318;NC_029680.1:LOC107411763;NC_029680.1:LOC107411890;NC_029680.1:LOC107411908;NC_029680.1:LOC107412023;NC_029680.1:LOC107412165;NC_029680.1:LOC107412169;NC_029680.1:LOC107412272;NC_029680.1:LOC107412282;NC_029680.1:LOC107412294;NC_029680.1:LOC107412324;NC_029680.1:LOC107412360;NC_029680.1:LOC107412395;NC_029680.1:LOC107412457;NC_029680.1:LOC107412567",
        "q_value": 1.0,
        "all_loci_q_value": 1.0,
        "significant": false
      },
      {
        "namespace": "GO_CC",
        "term": "GO:0140513",
        "name": "nuclear protein-containing complex",
        "hgt_count": 0,
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        "all_loci_p_value": 1.0,
        "hgt_all_loci": 1,
        "core_all_loci": 25,
        "hgt_loci": "",
        "core_loci": "NC_029680.1:LOC107410512;NC_029680.1:LOC107410533;NC_029680.1:LOC107411763;NC_029680.1:LOC107412294;NC_029680.1:LOC107412324;NC_029680.1:LOC107412395;NC_029680.1:LOC107412457;NC_029680.1:LOC107412567",
        "q_value": 1.0,
        "all_loci_q_value": 1.0,
        "significant": false
      },
      {
        "namespace": "GO_CC",
        "term": "GO:0140534",
        "name": "endoplasmic reticulum protein-containing complex",
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        "hgt_loci": "",
        "core_loci": "NC_029680.1:LOC107412165;NC_029680.1:LOC107412169",
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        "all_loci_q_value": 1.0,
        "significant": false
      },
      {
        "namespace": "GO_CC",
        "term": "GO:0140535",
        "name": "intracellular protein-containing complex",
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        "hgt_loci": "",
        "core_loci": "NC_029680.1:LOC107410533;NC_029680.1:LOC107411315",
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        "all_loci_q_value": 1.0,
        "significant": false
      },
      {
        "namespace": "GO_CC",
        "term": "GO:1902494",
        "name": "catalytic complex",
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        "hgt_loci": "",
        "core_loci": "NC_029680.1:LOC107410533;NC_029680.1:LOC107410634;NC_029680.1:LOC107412023;NC_029680.1:LOC107412169;NC_029680.1:LOC107412457",
        "q_value": 1.0,
        "all_loci_q_value": 1.0,
        "significant": false
      },
      {
        "namespace": "GO_CC",
        "term": "GO:1990234",
        "name": "transferase complex",
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        "hgt_all_loci": 1,
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        "hgt_loci": "",
        "core_loci": "NC_029680.1:LOC107410533;NC_029680.1:LOC107410634;NC_029680.1:LOC107412023;NC_029680.1:LOC107412169",
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        "all_loci_q_value": 1.0,
        "significant": false
      },
      {
        "namespace": "GO_CC",
        "term": "GO:1990904",
        "name": "ribonucleoprotein complex",
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        "all_loci_p_value": 1.0,
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        "hgt_loci": "",
        "core_loci": "NC_029680.1:LOC107410512;NC_029680.1:LOC107411763;NC_029680.1:LOC107412294;NC_029680.1:LOC107412324;NC_029680.1:LOC107412395;NC_029680.1:LOC107412567",
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        "significant": false
      }
    ],
    "KEGG": [],
    "eggNOG": [
      {
        "namespace": "eggNOG",
        "term": "A",
        "name": "RNA processing and modification",
        "hgt_count": 0,
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        "hgt_fraction": 0.0,
        "core_fraction": 0.15789473684210525,
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        "p_value": 1.0,
        "all_loci_p_value": 1.0,
        "hgt_all_loci": 1,
        "core_all_loci": 25,
        "hgt_loci": "",
        "core_loci": "NC_029680.1:LOC107411315;NC_029680.1:LOC107412294;NC_029680.1:LOC107412324",
        "q_value": 1.0,
        "all_loci_q_value": 1.0,
        "significant": false
      },
      {
        "namespace": "eggNOG",
        "term": "D",
        "name": "Cell cycle control, cell division, chromosome partitioning",
        "hgt_count": 0,
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        "hgt_fraction": 0.0,
        "core_fraction": 0.10526315789473684,
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        "all_loci_p_value": 1.0,
        "hgt_all_loci": 1,
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        "hgt_loci": "",
        "core_loci": "NC_029680.1:LOC107412294;NC_029680.1:LOC107412324",
        "q_value": 1.0,
        "all_loci_q_value": 1.0,
        "significant": false
      },
      {
        "namespace": "eggNOG",
        "term": "J",
        "name": "Translation, ribosomal structure and biogenesis",
        "hgt_count": 0,
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        "hgt_fraction": 0.0,
        "core_fraction": 0.15789473684210525,
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        "odds_ratio": 0.0,
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        "all_loci_p_value": 1.0,
        "hgt_all_loci": 1,
        "core_all_loci": 25,
        "hgt_loci": "",
        "core_loci": "NC_029680.1:LOC107411890;NC_029680.1:LOC107412457;NC_029680.1:LOC107412567",
        "q_value": 1.0,
        "all_loci_q_value": 1.0,
        "significant": false
      },
      {
        "namespace": "eggNOG",
        "term": "L",
        "name": "Replication, recombination and repair",
        "hgt_count": 0,
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        "hgt_total": 1,
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        "hgt_fraction": 0.0,
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        "hgt_all_loci": 1,
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        "hgt_loci": "",
        "core_loci": "NC_029680.1:LOC107410533;NC_029680.1:LOC107412023",
        "q_value": 1.0,
        "all_loci_q_value": 1.0,
        "significant": false
      },
      {
        "namespace": "eggNOG",
        "term": "S",
        "name": "Function unknown",
        "hgt_count": 0,
        "core_count": 3,
        "hgt_total": 1,
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        "hgt_fraction": 0.0,
        "core_fraction": 0.15789473684210525,
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        "odds_ratio": 0.0,
        "p_value": 1.0,
        "all_loci_p_value": 1.0,
        "hgt_all_loci": 1,
        "core_all_loci": 25,
        "hgt_loci": "",
        "core_loci": "NC_029680.1:LOC107412165;NC_029680.1:LOC107412272;NC_029680.1:LOC107412395",
        "q_value": 1.0,
        "all_loci_q_value": 1.0,
        "significant": false
      },
      {
        "namespace": "eggNOG",
        "term": "U",
        "name": "Intracellular trafficking, secretion, and vesicular transport",
        "hgt_count": 0,
        "core_count": 3,
        "hgt_total": 1,
        "core_total": 19,
        "hgt_fraction": 0.0,
        "core_fraction": 0.15789473684210525,
        "fold_enrichment": 0.0,
        "odds_ratio": 0.0,
        "p_value": 1.0,
        "all_loci_p_value": 1.0,
        "hgt_all_loci": 1,
        "core_all_loci": 25,
        "hgt_loci": "",
        "core_loci": "NC_029680.1:LOC107410561;NC_029680.1:LOC107411783;NC_029680.1:LOC107411908",
        "q_value": 1.0,
        "all_loci_q_value": 1.0,
        "significant": false
      }
    ]
  },
  "namespace_status": {
    "GO_BP": "COMPLETE",
    "GO_MF": "COMPLETE",
    "GO_CC": "COMPLETE",
    "KEGG": "UNAVAILABLE_INCOMPLETE_PATHWAY_MAPPING",
    "eggNOG": "COMPLETE"
  },
  "kegg_mapping": {
    "missing": [
      "ath:AT1G08460"
    ],
    "errors": [
      {
        "queried": [
          "ath:AT1G08460"
        ],
        "error": "<urlopen error [SSL: CERTIFICATE_VERIFY_FAILED] certificate verify failed: unable to get local issuer certificate (_ssl.c:1017)>"
      }
    ],
    "offline": false,
    "cache_sha256": "71c01b2f71b1074c5566fe0d1e27475b058a4461819c265923ea54e04751f11d"
  },
  "significant_terms": {
    "GO_BP": 0,
    "GO_MF": 0,
    "GO_CC": 0,
    "KEGG": 0,
    "eggNOG": 0
  },
  "methods": {
    "unit": "One physical coding locus; annotations unioned across its isoforms; shared HGT/CORE loci excluded.",
    "test": "One-sided Fisher exact test (HGT enrichment), BH across all tested terms in each namespace; combined term count >=2 before testing.",
    "denominator": "Loci with usable annotations in each namespace; no-hit, no-term and unresolved mapping excluded. All-locus sensitivity is also reported.",
    "GO": "is_a and part_of closure; obsolete terms resolve only with one replacement; three roots omitted.",
    "KEGG": "Exact Swiss-Prot KEGG gene to organism pathway links; pathways normalized to map IDs. Global maps 01100, 01110 and 01120 omitted.",
    "eggNOG": "Exact KOG/COG IDs to NCBI functional-category letters; unmapped ENOG identifiers excluded, not guessed.",
    "limitation": "Exploratory comparison with conserved BUSCO-derived CORE, not the whole genome. Homology-transferred annotations, unequal coverage and evolutionary dependence limit causal inference. HGT labels are candidates."
  }
}